Hello Ray, The SNP(129) table is a large one and because you are wanting to do a large number of queries the best solution would be to download the table and search it locally. You can find this and other SNP tables for hg18 here in our downloads section:
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ The best way would be to download and gunzip snp129.txt.gz, put all IDs into one file, one ID per line, no whitespace, and then run grep from the command line like this: grep -wFf fileOfRsIds.txt snp129.txt > mySnps.txt Hopefully this information was helpful and is enough to get you started. If you have further questions or require clarification feel free to contact the mailing list at [EMAIL PROTECTED] Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu Zhang, Ray (NIH/NIMH) [F] wrote: > Hi, > > > > I have a long list of about 1 million SNP rs-names. I would like to > retrieve a list of 1 million genomic coordinates, corresponding to the > positions of every SNP in the list. What is the best way to do this > using the Genome Browser? > > > > Thanks in advance > > > > Ray Zhang > > NIH research fellow > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
