Hello Urmila, You can get this information using the table browser (http://genome.ucsc.edu/cgi-bin/hgTables) by selecting:
group: comparative genomics track: conservation table: phastCons28wayPlacMammal region: click "define regions" and paste the list of regions you are interested in output format: data points This should give you a list of the base positions and their associated score. Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [EMAIL PROTECTED] Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu Urmila Choudhury wrote: > Hello, > > How can I download conservation scores for each base pair (28way - > placental) for a set of sequences from the human genome that are located > on different chromosomes without having to download the tracks for > entire chromosomes. Ideally I would need a file containing also > chromosome position data. > > Thanks in advance for your help, > > Urmila > > > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
