Hi Sarah, Yes. That information is stored in the 'snp129OrthoPt2Pa2Rm2' table. If the SNP (129) track is selected in the Table Browser, you can select the "ortho" table from the table drop-down menu (it is a "related table"). Hit "describe table schema" to see a description of the fields.
-- Brooke Rhead UCSC Genome Bioinformatics Group On 11/25/08 02:35, Sarah Browning wrote: > Hi Brooke > > Many thanks for your reply. > > Just one more thing...is there a quick way of downloading the status of > the chimp, macaque and orangutan alleles (and on which strand) for each > of the rs numbers? > > Thanks > > Sarah > > ------------------------------------------------------------------------ > *From:* Brooke Rhead <[EMAIL PROTECTED]> > *To:* Sarah Browning <[EMAIL PROTECTED]> > *Cc:* [email protected]; "[EMAIL PROTECTED]" > <[EMAIL PROTECTED]> > *Sent:* Monday, 24 November, 2008 8:54:22 > *Subject:* Re: [Genome] rs numbers > > Hello Sarah, > > You can do this using the Table Browser. Hit the "Tables" link in the > blue bar at the top of the page. Now make the following selections: > > clade: mammal > genome: human > assembly: Mar. 2006 > group: variation and repeats > track: SNPs (129) > table: snp129 > position: chr15:72,819,480-72,849,463 > output format: selected fields from primary and related tables > > Now hit "get output". On the next page, select the checkbox next to the > "name" field and hit "get output" again. You should get a list of all > of the rsIDs for the region you specified. > > I hope this answers your question. If you would be interested in a good > general introduction to using Genome Browser, please see the free > training materials from Open Helix located here: > > http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > Sarah Browning wrote on 11/23/08 11:32 AM: > > Hello > > > > I was wondering if somebody could possibly help me? > > > > I'd like to have all the rs ids (dbSNP 129) for variations found in > the region chr15:72,819,480-72,849,463. I've got the ids on the genome > browser > (http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human&db=hg18&hgsid=116331522&hgTracksConfigPage=notSet > > <http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human&db=hg18&hgsid=116331522&hgTracksConfigPage=notSet>) > > but can't copy and paste them into an excel sheet. Is there a quick and > easy way of getting these ids into a useable format? > > > > Many thanks > > > > Sarah > > > > > > _______________________________________________ > > Genome maillist - [email protected] <mailto:[email protected]> > > http://www.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
