Hello,
phastCons30way directory contains the phastCons the wig files for mm9, but in addition I need wib files. I do not find these files, and do not know how to build them. Avi --- On Sat, 5/30/09, Jennifer Jackson <[email protected]> wrote: > From: Jennifer Jackson <[email protected]> > Subject: Re: [Genome] wib files of PhastCons for mm9 > To: "Fungazid" <[email protected]> > Cc: [email protected] > Date: Saturday, May 30, 2009, 3:14 AM > Hello, > > The processing has been updated since mm8. > > The phastcons data for mm9 is located here: > http://hgdownload.cse.ucsc.edu/goldenPath/mm9/phastCons30way/ > > The README doc at this location as well as the track's > details page > (inside Assembly browser) describe data format. Also, here > is a direct > link: http://genome.ucsc.edu/goldenPath/help/phastCons.html > > I hope this helps, but please let us know if you have any > questions, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Fungazid wrote: > > Hello again, > > > > Thanks for your recent help (now liftOver works fine), > > > > > I have another problem: > > I installed hgWiggle program (compiled with the J. > Kent source code), and it seems to work fine with > gc5Base.wib/wig output. To my knowledge this is also a > recommended way for finding conservation statistics of > specific genomic regions (Is it true?). I find > phastCons17.wib/wig for mm8 in: > > > > ftp://hgdownload.cse.ucsc.edu/gbdb/mm8/wib/ > > ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/database > > > > But no such files for mm9. > > > > Could you add these tables (or > explain/direct-to-documentation on how to build the wib/wig, > if this is not a very slow process on simple PC). Or is > there a new way to find conservation statistics for large > scale work? > > > > > > Thanks > > Avi > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
