Thanks a lot. We are actually working with 36 way alignments, and we would be using qual scores of several more species, which are listed below. Do you think you could provide .qv files for all of them? Or if you could provide us the binary to convert wib to qv, we'll take care of it.
bosTau2 ftp://hgdownload.cse.ucsc.edu/gbdb/bosTau2/wib calJac1 ftp://hgdownload.cse.ucsc.edu/gbdb/calJac1/wib canFam2 ftp://hgdownload.cse.ucsc.edu/gbdb/canFam2/wib cavPor3 ftp://hgdownload.cse.ucsc.edu/gbdb/cavPor3/wib danRer5 ftp://hgdownload.cse.ucsc.edu/gbdb/danRer5/wib equCab2 ftp://hgdownload.cse.ucsc.edu/gbdb/equCab2/wib felCat3 ftp://hgdownload.cse.ucsc.edu/gbdb/felCat3/wib fr2 ftp://hgdownload.cse.ucsc.edu/gbdb/fr2/wib galGal3 ftp://hgdownload.cse.ucsc.edu/gbdb/galGal3/wib gasAcu1 ftp://hgdownload.cse.ucsc.edu/gbdb/gasAcu1/wib mm9 ftp://hgdownload.cse.ucsc.edu/gbdb/mm9/wib monDom4 ftp://hgdownload.cse.ucsc.edu/gbdb/monDom4/wib ornAna1 ftp://hgdownload.cse.ucsc.edu/gbdb/ornAna1/wib oryLat2 ftp://hgdownload.cse.ucsc.edu/gbdb/oryLat2/wib rn4 ftp://hgdownload.cse.ucsc.edu/gbdb/rn4/wib taeGut1 ftp://hgdownload.cse.ucsc.edu/gbdb/taeGut1/wib tetNig1 ftp://hgdownload.cse.ucsc.edu/gbdb/tetNig1/wib xenTro2 ftp://hgdownload.cse.ucsc.edu/gbdb/xenTro2/wib Thanks! Guru. On Jun 5, 2009, at 3:59 PM, Jennifer Jackson wrote: > Hello, > > We have added the file to the Downloads location: > ftp: goldenPath/anoCar1/bigZips/anoCar1.qual.qv.gz > > The data is also accessible from the source: > ftp://ftp.broad.mit.edu/pub/assemblies/reptiles/lizard/AnoCar1.0/ > assembly.quals.gz > > Thanks, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Guruprasad Ananda wrote: >> Hi, >> >> I downloaded the anoCar1 qual scores file from ftp:// >> hgdownload.cse.ucsc.edu/gbdb/anoCar1/wib, and it is in .wib >> format. I would like to convert this to .qv format which would >> contain base by base qual scores in multiple fasta format (1 >> fasta per chr). Some of your qual score datasets already exist in >> this format. For instance, rheMac2 qual score file at http:// >> hgdownload.cse.ucsc.edu/goldenPath/ rheMac2/bigZips/ >> rheMac2.qual.qv.gz. >> I tried using the hgWiggle binary for this conversion, but in >> vain. Can you please direct me to the right binary for this >> conversion? >> >> Thanks, >> Guru. >> >> Guruprasad Ananda >> Graduate Student >> Bioinformatics and Genomics >> The Pennsylvania State University >> >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> Regards, Guruprasad Ananda Graduate Student Bioinformatics and Genomics The Pennsylvania State University _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
