Hi Kayla, I downloaded all the txt.gz data from the ftp site. I am writing my own script to exact information from each table. But I just realized that I need table schema for each of the tables. Where can I download this information at one place?
Thank you very much for your help! Yan >Yan Asmann, Ph.D. | Assistant Professor of Medical Informatics | Division of Biomedical Statistics and Informatics| College of Medicine | 507-266-6818 | Fax: 507-284-0360 | [email protected] >Mayo Clinic | 200 First Street SW | Rochester, MN 55905 | www.mayoclinic.org > -----Original Message----- From: Kayla Smith [mailto:[email protected]] Sent: Thursday, May 28, 2009 6:20 PM To: Asmann, Yan W., Ph.D. Cc: [email protected] Subject: Re: [Genome] Genomic Regions of Interest Hello Yan, The approach I would take to this problem is to first create a "Custom Track" of your regions of interest, and then intersect existing annotation tracks with that Custom Track. Here is some information on custom tracks, http://genome.ucsc.edu/cgi-bin/hgCustom http://genome.ucsc.edu/goldenPath/help/customTrack.html Or if you'd like to download data and write your own scripts to search through it, here is our downloads page for hg18 (sometimes takes awhile to load): http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/ Please note that the Galaxy website has some kind intersection tools as well: http://main.g2.bx.psu.edu/ I hope some of these tools will be useful to you. Please don't hesitate to contact us again if you require further assistance. Kayla Smith UCSC Genome Bioinformatics Group ----- "Yan W. Asmann, Ph.D." <[email protected]> wrote: > Hi, > I am interested in finding out all features of particular genomic > regions. One way to do this is by looking at all overlapping Genome > Browser Tracks. To do this at the interactive web browser, I'd have > to > look at one track or several tracks at a time. Is there a better way > of > doing this? > > Is there an option to download data for all tracks, so I can write a > script to search for tracks overlapping with my regions of interest? > > Thanks! > Yan > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
