re-send ----- Original Message ----- From: "Jennifer Jackson" <[email protected]> To: "Bogdan Tanasa" <[email protected]> Sent: Friday, July 17, 2009 12:23:10 PM GMT -08:00 US/Canada Pacific Subject: Re: [Genome] list of exon coordinates
Hello, Use the Table browser to downloads this type of information. Look for tracks in the Gene and Gene Prediction group (such as UCSC Genes (knownGene), RefSeq Genes (refGene), et). Track description pages provide primary table names with links to schema information. The file format genePred defines exon coordinates for transcripts associated with defined genes. In many cases, joining the primary table with associated tables (kgXref, kgAlias) in the output will link in useful common IDs (gene names, etc). File format: http://genome.ucsc.edu/FAQ/FAQformat#format9 Table browser: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Obtaining the same data using ftp or mySQL: http://genome.ucsc.edu/FAQ/FAQformat#format9 http://genome.ucsc.edu/FAQ/FAQdownloads#download29 Thanks, Jennifer Jackson UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Bogdan Tanasa" <[email protected]> To: [email protected] Sent: Friday, July 17, 2009 11:18:02 AM GMT -08:00 US/Canada Pacific Subject: [Genome] list of exon coordinates Hello and good afternoon, please could you let me know whether there is a quick way to download the coordinates of the gene exons ? much thanks, bogdan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
