Hi all, I am sorry in advance if my following questions are not appropriate to post here. I am a new user of the list, so please be easy on me.
Our new lab is going to build a new Solexa sequencing system, and I am trying to learn as much things as I can prior to the coming of the machine. One of the task is to consider what is the BEST solution for the browser/viewer that we should acquire for our analysis. We have consulted quite some different groups and most of them have their own UCSC Browser mirror locally. We are thinking of doing the same thing. But I still want to learn from your experience and advice. So, any input would be greatly appreciated. Here comes the questions: 1. What genome browsers/viewers do you use at your lab for your alignment viewer/analysis? 2. If you have ever tried others available out there (gbrowse <http://gmod.org/wiki/GBrowse>, IGV <https://www.broad.harvard.edu/igv/index.html>, EagleView <http://bioinformatics.bc.edu/marthlab/EagleView>, MapView <http://evolution.sysu.edu.cn/mapview/>, Samtools <http://samtools.sourceforge.net/> etc..)? How is the comparison between UCSC Browser and those softwares? Thank you very much, KC. -- Nguyen, Cuong K. 9000 Rockville Pike Building 10, Room 11N254 10 Center Drive Bethesda, MD 20892-1892 Phone: 301-451-3227 Fax: 301-480-7352 Email: nguye...@mail.nih.gov _______________________________________________ Genome maillist - Genome@soe.ucsc.edu https://lists.soe.ucsc.edu/mailman/listinfo/genome
