Good Morning: The example you list here is already a bedGraph file. Please note the description of this file format and how to use it in a custom track: http://genome.ucsc.edu/goldenPath/help/bedgraph.html
--Hiram suman pal wrote: > Hello, > > I think the Windows environment of my PC is not allowing the program to > download bedItemOverlapCount properly from the UCSC site. Thus it cannot run > the file in the Windows environment. Is there any way I can bypass the file > problem using some command prompts. > > Alternatively, if I just add the following lines in the text editor of the > bed file and directly upload as custom track will it work ! e.g. > > #sort bedFile.bed | bedItemOverlapCount [options] <dm3> stdin > browser position chr4:0-7164 > chr4 0 245 3.39 > chr4 690 1230 3.14 > chr4 713 1258 3.31 > chr4 1575 2130 2.84 > chr4 1932 3506 3.39 > chr4 2310 2645 3.21 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
