You can also get a zip of the source here: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip
Instructions for use are in src/product -Galt On 12/09/10 10:14, Vanessa Kirkup Swing wrote: > Dear Jianchao, > > You can obtain the source tree by following the instructions provided here: > http://genome.ucsc.edu/admin/git.html > > If you have further questions, please contact the mailing list. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > ----- Original Message ----- > From: "Jianchao Yao" <[email protected]> > To: "Pauline Fujita" <[email protected]> > Cc: [email protected] > Sent: Thursday, December 9, 2010 8:21:19 AM GMT -08:00 US/Canada Pacific > Subject: Re: [Genome] liftOver - "command not found" > > Hi, Pauline > > Thanks for getting back to me. I tried to add the directory of liftOver to my > PATH but still got an error message: > >> liftOver: /lib64/tls/libc.so.6: version `GLIBC_2.4' not found (required by >> liftOver) > > Our IT just told me that > > "GLIBC is a library which is an inherent part of the Linux kernel on all the > HPCC nodes. It cannot be updated without a massive Linux upgrade of the > entire cluster, which would break lots of installed software. That is not > practical. Basically, we will need to upgrade by replacing the HPCC with a > new system (we are trying to find funding). > > This code was built/compiled for a newer Linux than the one we have, which is: > > [r...@blade169 ~]# uname -r > 2.6.9-42.0.3.ELsmp" > > They suggested me to get the source code for liftOver to use the GLIBC we > have. > > Could you help me on this? Thanks a lot! > > -Jianchao > > -----Original Message----- > From: Pauline Fujita [mailto:[email protected]] > Sent: Wednesday, December 08, 2010 5:53 PM > To: Yao, Jianchao > Cc: [email protected] > Subject: Re: [Genome] liftOver - "command not found" > > Hello Jianchao, > > The error indicates that bash is not able to locate the liftOver program. > You can either add the location of liftOver to your bash PATH environment > variable, or you can specify the path when you run it. If you are in the > directory where liftOver resides, type: > > ./liftOver > > > Hopefully this information was helpful and answers your question. If you have > further questions or require clarification feel free to contact the mailing > list at [email protected]. > > Regards, > > Pauline Fujita > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu > > > > On 12/08/10 11:01, Yao, Jianchao wrote: >> To Whom It May Concern: >> >> >> >> I just downloaded liftOver for linux.x86_64 but after I typed liftOver >> in the command line, I got >> >> Ø -bash: liftOver: command not found >> >> I tried liftOver for linux.i386 but still got the same error.. >> >> Can someone advise me on this error? Thanks in advance >> >> -Jianchao >> >> >> >> ************************************ >> >> Jianchao Yao, Ph.D. >> >> Woodbury Genome Center >> >> Cold Spring Harbor Laboratory >> >> 500 Sunnyside Boulevard >> >> Woodbury, NY 11797 >> >> Email: [email protected] <mailto:[email protected]> >> >> ************************************ >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
