Hi,
I was trying to build liftOver from source since the binary you provide requires GLIBC 2.4, and we have an older Linux kernel with GLIBC 2.3.4. I got the source from http://genome.ucsc.edu/admin/git.html, and did the build according to the README and also http://genome.ucsc.edu/admin/jk-install.html. Then I used "make install" to put the built executables into DESTDIR ~/bin/hg. It looked like "hgLiftOver was built (not liftOver) but I got this when I tried to run it: $ ~/bin/hg/hgLiftOver test_hg19_input.txt hg19ToHg18.over.chain test_hg18_output.txt unmapped $ Couldn't open ~/.hg.conf , No such file or directory Also, I tried to build liftOver by itself and it doesn't build/link: Under ~/kent/src/hg/liftOver, I typed "make"... $ make gcc -O -g -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_ -DUSE_SSL -DUSE_PNG -DCOLOR32 -Wall -Werror -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o liftOver.o -c liftOver.c make: *** No rule to make target `../../lib//jkhgap.a', needed by `liftOver'. Stop. I am not sure how to fix this problem now...Can anyone help me on this? Your help will be greatly appreciated. -Jianchao ************************************ Jianchao Yao, Ph.D. Woodbury Genome Center Cold Spring Harbor Laboratory 500 Sunnyside Boulevard Woodbury, NY 11797 Email: [email protected] <mailto:[email protected]> ************************************ _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
