Dear Archie, The search function is designed for easy viewing of the the SNPs within the browser.
The best tool to use for finding the exact SNP coordinates is the table browser. To get to the table browser from the home page click on "Tables" in the blue navigation bar. Set the following: clade: Mammal genome: Human assembly: hg19 group: Variation and Repeats track: SNPs (131) or SNPs (130) region: genome identifiers (names/accessions): (paste in the identifiers you are interested in) output format: hyperlinks to the Genome Browser (this will give you the same format that you were getting using the search function, but they will be the exact coordinates of the SNPs and not the browser window coordinates). click "get output" If you have further questions or comments, please feel free to contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Archie Russell" <[email protected]> To: [email protected] Sent: Thursday, January 20, 2011 2:30:05 PM Subject: [Genome] snp coord feature request Hi guys When I search for an rs #, the results page comes back with some window around the snp, e.g. Simple Nucleotide Polymorphisms (dbSNP build 130) rs806721 at chr1:31594-32094 <-- 500bp window rs806721 at chr15:100306458-100306958 rs806721 at chr19:34342-34842 Could you make this report just show the actual coordinate and not the window? That way it would make a really good SNP coordinate lookup tool. I think it may have worked that way before. Thanks, Archie _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
