I just realized this list is configure with reply-to to the sender, I'm copying my answer of this email that I intended to send to the list. -- Carlos Javier Borroto Baltimore, MD
On Thu, Feb 24, 2011 at 12:54 PM, Carlos Javier Borroto <[email protected]> wrote: > On Thu, Feb 24, 2011 at 12:22 PM, Cook, Malcolm <[email protected]> wrote: >> What version of bedtools? >> >> You need to use the -split option >> >> c.f. http://code.google.com/p/bedtools/wiki/History >> >> Version 2.8.0 (July-05-2010) >> Proper support for "split" BAM alignments and "blocked" BED (aka BED12) >> features. By using the "-split" option, intersectBed, coverageBed, >> genomeCoverageBed, and bamToBed will now correctly compute overlaps/coverage >> solely for the "split" portions of BAM alignments or the "blocks" of BED12 >> features such as genes. >> >> Cheers, > > Thanks, I'm using last version 2.11.0 and yes, this solves my problem, > I should had look harder into BEBTools documentation or thought about > better keywords for my Google search. > > Again thanks a lot, > -- > Carlos Javier Borroto > Baltimore, MD > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
