Hello Nickolas, You can do this with Ensembl Genomes BioMart, as follows:
Go to http://plants.ensembl.org/biomart/martview/ Select 'Plant Gene Mart (Release 8)'. Select 'Arabidopsis thaliana genes (TAIR10)'. Click on 'Attributes' in the side menu. Click on the '+' in front of 'GENE'. Deselect 'Ensembl Transcript ID'. Select 'Associated Gene Name'. Select 'Chromosome Name'. Select 'Gene Start (bp)'. Select 'Gene End (bp)'. Click the [Results] button. This gives you a preview of 10 rows of the results. To get all results, select 'View all rows' or export your results to a file. Hope this helps, Bert On Tue, Mar 8, 2011 at 11:30 PM, Luvina Guruvadoo <[email protected]>wrote: > Hi Nickolas, > > Unfortunately, we have no leads that we know of that currently have this > information available. We suggest contacting TAIR at > [email protected] > <javascript:location.href='mailto:[email protected]?SUBJECT=' + > document.title + '&BODY=' +'URL: ' + escape(location.href)>. They may be > able to provide more information. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > Staffa, Nick (NIH/NIEHS) [C] wrote: > > I need a table of gene starts and ends for Arabidopsis thaliana like > unto those provided at UCSC for human and mouse. > > Apparently there are none here, nor at Ensemble. I can't even find one > at TAIR. > > Any information would be greatly appreciated. > > > > > > Nickolas G. Staffa, Jr. Ph.D. > > Telephone: 919-316-4569 (NIEHS: 6-4569) > > Scientific Computing Support Group > > NIEHS E-WITS Contract > > National Institute of Environmental Health Sciences > > National Institutes of Health > > Research Triangle Park, North Carolina > > > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > -- Bert Overduin, Ph.D. Vertebrate Genomics Team EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom http://www.ebi.ac.uk/~bert _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
