Good Afternoon Sri: You can run phylop on any alignment you create:
http://compgen.bscb.cornell.edu/phast/help-pages/phyloP.txt --Hiram Srirangan Sampath wrote: > Hello, > How can one generate PhyloP values for only a few species (entire > genome) ...say > Human, Chimp, Orangutan and Rhesus...instead of relying on the PhyloP values > for 44 > or 46 species (that includes Primate, placental mammals, and vertebrates > species) > that can be downloaded from UCSC website? This is because genome sequences of > some > species are bad and including them in the PhyloP calculation could lead to > bias. > Thank you. > > Sri. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
