Hi, Luvina, Thank you very much for the answer! I queried the public database which might be an old version.
Thanks, Jing Xia On Fri, Mar 11, 2011 at 12:03 PM, Luvina Guruvadoo <[email protected]> wrote: > Hi Jing, > > As it turns out, the identifier ENST00000515486 (release 59) has been > retired from the Ensembl database (see: > http://uswest.ensembl.org/Homo_sapiens/Gene/Summary?g=ENST00000515486;db=core). > We have recently updated the Ensembl Genes table with release 61, which > is why this identifier is not being recognized. As for the mysql entry, > is it be possible you queried an older version of the hg19 database? > > Though Ensembl has retired ENST00000515486, the ENCODE Gencode Genes > table still contains information on this identifier which may be useful > for you. Using the Table Browser, set the following: group: Genes and > Gene Prediction Tracks, track: Gencode Genes, table: Gencode Manual > (wgEncodeGencodeManualIV4). > > I hope this helps. Please contact us again at [email protected] if you > have any further questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > Jing Xia wrote: >> Hi there, >> >> The hg19 ensGene table seems not able to recognize certain gene's >> identifier, but through mysql access, the identifier is in the ensGene >> table, field name. Could you please provide me some helps on that? >> >> E.g ENST00000515486 >> >> Thank you very much, >> Jing Xia >> -- >> Graduate student >> Computer Science and Engineering, >> Washington University in St Louis >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
