Hi Chen,

Here are some previously-answered mailing list questions that address 
this same topic:

https://lists.soe.ucsc.edu/pipermail/genome/2007-June/013907.html
https://lists.soe.ucsc.edu/pipermail/genome/2007-October/014783.html

Please write back to [email protected] if you have further questions.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


On 03/01/11 20:12, c c wrote:
> Hi,
> 
> I have a genomic region of interest,and I want to extract all the 
> intergenetic 
> regions for calculating the methylation levels with our own MeDIP-seq 
> results. I 
> have known how to fetch exon/intron coordinates from UCSC Table Browser, is 
> there any efficient way of fetching intergenetic regions?
> 
> Any help would be appreciated!
> 
> Chen Cao
> Department of Biomedical Engineering
> State Key Laboratory of Bioelectronics 
> (Chien-Shiung Wu Laboratory)
> Southeast University, Nanjing, 210096, China
> 
> 
>       
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