Hi Hiram,
Thanks a lot. Previous problems already are fixed depending on your advice.
I already upgraded Genome browser from v218 to v247 with MySQL 5.1.54.
In my source tree, I still use old directory .../trackDb/*,
this is because I have myself customer data, and I can upload data
but to encounter when I compile, error message the following:
...............................................................
$ cd /home/wangp/jksrc/kent/src/hg/makeDb/trackDb
$ make alpha DBS=hg18
find . -type l -exec rm {} \;
./loadTracks -release=alpha trackDb hgFindSpec hg18
hgTrackDb -priority=human/priority.ra -release=alpha human hg18 trackDb
../../lib/trackDb.sql .
-priority is not a valid option
make: *** [alpha] Error 255
...............................................................
Please give me some advice
Best & Regards
Wuqi
-----Original Message-----
From: Hiram Clawson [mailto:[email protected]]
Sent: Wednesday, March 16, 2011 7:27 AM
To: WANG Wuqi
Cc: [email protected]
Subject: Re: [Genome] Upgrade UCSC genome browser
Good Afternoon:
Please edit the src/hg/hgTables/makefile and remove
the --executability argument from the rsyncDataOpts list.
If you encounter this again in a different makefile, perform
the same edit. We will be removing this argument from
the source tree.
--Hiram
=================================================================
To encounter the following errors when I upgrade this genome browser from
version 218 to 247:
$ cd jksrc/kent/src/hg
$ make compile
$ make install
...,
chmod g+w hgTables
chmod a+rx hgTables
rm -f /var/www/var/www/hgTables
mv hgTables /var/www/var/www/hgTables
rm -f /var/www/var/www/all.joiner
cp ../makeDb/schema/all.joiner /var/www/var/www
rm -rf /var/www/var/www/greatData
rsync --times --recursive --executability --omit-dir-times --cvs-exclude
--delete greatData /var/www/var/www/
rsync: --executability: unknown option
rsync error: syntax or usage error (code 1) at main.c(1084)
make[1]: *** [install] Error 1
make[1]: Leaving directory `/home/wangp/jksrc/kent/src/hg/hgTables'
make: *** [hgTables.install] Error 2
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