Hi Alan, We update the hg19 DECIPHER track whenever new updates from DECIPHER become available (there is some time delay due to our QA process). Starting on Jan 28, 2011, DECIPHER is releasing their data on hg19 only. So our hg18 DECIPHER track (last updated 1/11/2011) will not be updated in the future.
Due to sensitive nature of DECIPHER, we do not allow users to download this data either via the table browser or downloads page. Thus, our usual liftOver tools will not be useful. You can instead lift your other data from hg18 to hg19 for analysis with DECIPHER. I'm sorry for any inconvenience this may cause you. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 4/12/11 7:59 AM, A. Mrsic wrote: > Dear UCSC Genome Bioinfomatics* *developers, > > A short introduction of my position within Clinical Genetics department > (Erasmus Medical Center). As a member of the ArrayUnit within Clinical > Genetics I use UCSC Genome Browser on Human Mar. 2006 (NCBI36/hg18) > Assembly for analyzing array data. Therefore I need several track > information. > > However the DECIPHER database has all patient aberrations, genes and > variation data remapped to *GRCh37 (hg19). Based on this information > *and to prevent getting any mismatches with previously analyzed data > *come the following two questions.* > > Are any new updates being performed on existing DECIPHER database hg18 > within UCSC? > How often is the DECIPHER database within UCSC being converted and > updated to hg18? > > > Best regards, > Alan Mrsic > Technician > > Erasmus MC > Clinical Genetics > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
