PS. heard you are sick. bummer ;--(
get well.
--b0b
On 4/12/2011 2:37 PM, Brooke Rhead wrote:
> Hi Ann,
>
> My responses are interspersed below:
>
> On 04/09/11 16:57, Ann Eileen Miller Baker wrote:
>> QUESTION1
>>
>> for the mouse genome, have most introns, exons, 5'UTR, 3'UTR,
>> coding exons, whole genes been mapped? I ask because given
>>>> 6500 DMit loci, UCSC analysis fouind only 43 each of 3'UTR,
>> coding exon, exon plus, intron, and whole gene
>
> I think so. Many publications estimate the number of moue genes to be
> around 25,000-30,000, which is about the number we show in the Genome
> Browser (in the UCSC Genes and RefSeq Genes tracks, at least).
>
>> QUESTION2
>>
>> is it possible that within one mouse DMit locus that all above
>> (intron, exons, coding exon, exon plus, 5'UTR, 3'UTR,
>> whole gene) occur? I ask because this is what the UCSC analysis
>> showed
>
> I took a brief look at the STS Markers track alongside the UCSC Genes
> track, and the STS Markers generally looked much smaller than the genes.
> Each DMit locus covering an entire gene seems like a dubious result.
>
> --
> Brooke Rhead
> UCSC Genome Bioinformatics Group
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
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