Dear UCSC Webmaster I always use your database.I am interested in tRNA position in genome.
I can not find tRNA information in your C.elegans database. for exampl, below is the choromosomal position of Met-tRNA, in tRNA database. http://gtrnadb.ucsc.edu/Celeg/ chrI 3638926 3638854 View<http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce4&position=chrI:3638704-3639076> Met In WormBase RNA track, it appeared as follows at the position of tRNA : ------------------------------------------------ *Outside Link: *T28F2.t1<http://ws170.wormbase.org/db/gene/gene?name=T28F2.t1;class=Gene> *Position:* chrI:3638854-3638926<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=191662743&db=ce4&position=chrI%3A3638854-3638926> *Genomic Size:* 73 *Strand:* - Links to sequence: - Translated Protein<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcTranslatedPredMRna&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=translate&table=sangerRnaGene>from predicted mRNA - Predicted mRNA<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcGeneMrna&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=sangerRnaGene&table=sangerRnaGene>from genomic sequences - Genomic Sequence<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcGeneInGenome&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=sangerRnaGene&table=sangerRnaGene>from assembly --------------------------------------------------------------------------------- T28F2.t1 is not annotated to tRNA but a predicted protein. On the other hand, for the human database in UCSC, tRNA appeared in repeat masker tracks. There is something different between these two databases Sincerely yours Shirou Yamada Gunma University, JAPAN [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
