Hi Asaf, Just wanted to clarify... qStart = Query Start tStart = Target Start; the target being the reference assembly.
Also, I noticed there should have been = signs between a couple items below: - Greg On 4/25/11 10:22 AM, Greg Roe wrote: > When you have: > tEnd[i-1]< tStart[i] > qEnd[i-1] = qStart[i] > > you have an insertion in the target (aka deletion in the query); > possibly an intron. > > When you have: > tEnd[i-1] = tStart[i] > qEnd[i-1]< qStart[i] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
