Hi, I find several genomic loci that have two Repeatmasker annotations: e.g. (mm9) chr2:146,868,722-146,868,898 contains an annotation for a SINE element but also an LTR element. How comes that two different transposon classes overlap here and were assigned to this locus? Did the Repbase consensus sequences not allow an unambiguous assignment at these loci when the repeatmask was built? Thanks, Andrea
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