Hi Degiang, If a BAM track has too many reads in a region of the genome, it will automatically display in squish or dense. Is this what you are seeing? You can right click on a track to determine the current track view.
If the above describes your issue, this previous mailing list question should be able to help you: https://lists.soe.ucsc.edu/pipermail/genome/2010-December/024318.html. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 5/3/11 8:28 AM, deqiang sun wrote: > Dear there, > > I uploaded two bam files for visualization but the browser only shows me only > one block for the first track. I expect it would show me all the reads like > the second track. I have made sure that they have both exactly same track > control settings. The only difference is the underlying reads in that region. > I suspect that the first track has many many more reads than the browser > limit so there is only one block showing up. Do I guess it correctly? Is > there any work around? > > Best regards, > > Deqiang Sun > Baylor College of Medicine > 713-798-4895 > [email protected] > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
