I want to determine which repetitive fragments come from the same transposable
element.
At first, I downloaded the table of rmsk. But it told me that "First digit of
id field in RepeatMasker .out file. Best ignored" in the id field.
And then I downloaded the result of RepeatMasker from the directory of bigZips.
But I found same fragment have the same ID, while they do not come from the
same transposable elememt.
Such as: canFam2 chromOut.tar.gz chr1 and ID 1
hg18 chromOut.tar.gz chr1 and ID1
Who can tell me how to determine which fragments come from the same
transposable element ?
2011-05-04
sydghyyh14
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