Hello everyone, I'd like to create a heat map (gene densities). ENSEMBL offers a graph for gene densities (they distinguish between "known" and "novel" genes). However, I contacted the people from ENSEMBL, but apparently these gene density data cannot be downloaded (neither the graph):
http://www.ensembl.org/Tetraodon_nigroviridis/Location/Chromosome?r=1:783604-1032531 Is there a way to get such a graph or all the info to plot such a graph oneself from UCSC? Where can I get it? And: How reliable/trustworthy are these data? As I've seen in ENSEMBL, most genes of the ""non-model"" organisms (i.e. Medaka) are categorized as "novel genes". Are these genes predicted by homology when compared to other genomes? Also, I'd like to know, how I can find the exact position of the centromeres of the ""non-model"" organism genomes (i.e. stickleback)? Thank you a lot for your help, Marius ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
