Hi Teresita, UCSC's database tables have only aggregate allele frequencies from all submissions for each SNP. I would recommend downloading the data directly from 1000 Genomes. The pilot project data have been published:
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/release/2010_07/ (see the file README.2010_07_release in that directory; publication is http://www.ncbi.nlm.nih.gov/pubmed/20981092) The main project is well underway with additional populations, refined methodologies etc., but won't be published for some time. Richard Durbin at Sanger is leading the project, and I assume he could advise about use of not-yet-published data. I am actively developing genome browser support for the VCF+tabix data format used for 1000 Genomes variant calls. If you would like to display 1000 Genomes variants in the genome browser, please let me know off-list and I'll send instructions. Hope that helps, Angie ----- "Teresita Diaz De Ståhl" <[email protected]> wrote: > From: "Teresita Diaz De Ståhl" <[email protected]> > To: [email protected] > Sent: Tuesday, May 17, 2011 5:59:42 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Allele frequencies > > Hi! > > I would be interested in downloading allele frequency data for a list > of SNPs but only for 1000 genomes and for a special population. Is it > possible to do this from UCSC ? > > Thanks a lot for your help > > teresita > > Teresita Díaz de Ståhl, PhD., Assoc. Prof. > Department of Oncology-Pathology > Cancer Center Karolinska, CCK R8:04 > Karolinska Institutet > SE-171 76 Stockholm, Sweden > +46-8-517 721 35 (office) > E-mail: > [email protected]<mailto:[email protected]> > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
