On May 25, 2011 2:09 PM, "Shaun Jackman" <[email protected]> wrote: > > Hi, > > I have small alignment of a single sequence in SAM format generated by > bwasw that I'd like to view as a custom track. I'd like to paste this > SAM alignment into the custom track form, but I get the error > "Unrecognized format". I could convert the SAM file to a BAM file and > use the "track type=bam bigDataUrl" format custom track, but for a small > alignment like this it would be convenient to be able to paste in SAM > format. >
For a single sequence, you could consider alignment with blat, gmap, or another software that can output psl. Sean > Thanks, > Shaun > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
