Hi Michael, I believe you are asking about our multiz alignments here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/. Note that this is the alignment of other species' entire assemblies to human (hg19), not just a list of genes and their orthologs.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 6/7/11 4:41 AM, Michael Lush wrote: > > I currently download orthology assertionf between human and > C. elegans, drosophila, mouse, rat, S. cerevisiae and zebrafish > from ftp://hgdownload.cse.ucsc.edu/goldenPath/currentGenomes > for our HCOP service (www.genenames.org/hcop) > > I understand that there are orthology assertions from human to other > species in your database I'm currently looking at adding new species to > the search (and adding extra support to existing ones) and I was wondering > how to access this data. > > -- > Michael > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Michael John Lush PhD Tel:44-1223 492626 > Bioinformatician > HUGO Gene Nomenclature Committee Email: [email protected] > European Bioinformatics Institute > Hinxton, Cambridge > URL: http://www.genenames.org > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
