Hello Anna,
Apologies for the delay in replying. You can get this information from
our gene prediction tracks using our Table Browser
(http://genome.ucsc.edu/cgi-bin/hgTables).
After selecting your assembly of interest select:
group: Genes and Gene Prediction Tracks
track: for this example we'll use UCSC Genes
table: knownGene
If you're not sure which track you want to use you can read more about
each track on its description page. You can get to the description page
for any given track by clicking on the gray bar to the left of the track
in the main display or by clicking on the track title above its pulldown
menu.
If you're not sure which tables you want to access, you can also click
on "describe table schema" for any table and it will take you to a
description of that table's contents. For your query you will want to
choose the main table associated with your gene prediction track.
Then you'll want to select:
output format: "selected fields from primary and related tables"
Once you click on "get output" this will take you to a menu where you
can specify which fields you want to retrieve (i.e. transcription
start/end position, exon start/end positions etc).
Best regards,
Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
> Dear GB developer,
>
> I'm trying to find out whether I can get specific gene features e.g.
> exon,intron, 5'UTR, splice junction from a list of chromosome coordinates?
> Is this possible to get this information for multiple coordinates by
> submitting a single query?
>
> Thank you very much in advance,
> Anna
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
