Hi Igor,
The best tool for this would be the Table Browser. You can get to the Table
Browser by clicking on "Tables" from the blue navigation bar.
Set the appropriate clade, genome, assembly.
Set the following:
group: Genes and Gene Prediction Tracks
track: UCSC genes
table: knownGene
region: genome
identifiers (names/accessions): (paste in the ones you are interested in)
output: sequence
Click "get output"
Select "genomic"
Click "submit"
check the following:
5' UTR Exons
CDS Exons
Then select the other options you would like.
Click "get sequence"
If you have further questions, please don't hesitate to contact the mailing
list: [email protected].
Vanessa Kirkup Swing
UCSC Genome Bioinformatics Group
----- Original Message -----
From: "Igor Leykin" <[email protected]>
To: [email protected]
Sent: Thursday, June 9, 2011 12:58:29 PM
Subject: [Genome] downloading exon sequences
Hello,
Is it possible to download all exon sequences with flanking regions (e.g. 100
bp) for any given gene from USCS Genome site as a single operation?
Thank you,
Igor
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
