Hi again, A colleague pointed out that you might also find the "Short Match" track useful. It is available on all assemblies, in the "Mapping and Sequencing Tracks" section.
To use it, go to the track controls page and set the sequence to "CG" to see the distinct dinucleotide locations. -- Brooke Rhead UCSC Genome Bioinformatics Group On 06/13/11 15:39, Brooke Rhead wrote: > Hello Leeda, > > I'm glad to hear that you find the Genome Browser useful. > > Which organism and assembly are you looking at? Many assemblies have a > separate "CpG Islands" track in addition to the "GC Percent" track. If > the CpG Islands track exists on your assembly, it will be further down > on the page, in the "Expression and Regulation" group. (It is possible > that the track does not exist on the assembly you are using, though.) > > If you have further questions, please write back to [email protected]. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > On 06/12/11 07:43, dlulida wrote: >> Dear UCSC Genome Bioinformatics Group, >> >> I am glad to use the UCSC Genome Browser ,but I have a problem using > this browse. >> I could get the information of GC percent in 5-Base windows, but I do >> not know how to get the information of CpG dinucleotide,Please tell me > how to set the program and make each of the CpG dinucleotide display (it > not displays the CpG Islands). >> Thank you for your help! >> >> leeda >> China medical university >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
