Good Morning Jack:

Please note, you can see all possible hg.conf settings in
the source tree file: src/product/ex.hg.conf
http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/product/ex.hg.conf

There is a setting for the MySQL port:

# if your MySQL system is configured for a different socket connection,
# use the following variables to override the MySQL defaults:
# db.socket=/var/lib/mysql/mysql.sock
# db.port=3306
# *!# NOTE: the port override will only work when host is *not* localhost
#       when localhost is used, MySQL may connect via shared memory
#       connections and not via TCP/IP socket ports

--Hiram

OW Jack Ling wrote:
> Hi ,
> 
>                 I've a UCSC mirror site here where it's database is one of 
> the databases in the database server. As the configuration file hg.conf has 
> only configuration for host(shown below), how do I define the port or pid for 
> the UCSC database server  ?
> 
> # db.host is the name of the MySQL host to connect to
> #  high-volume sites will want a separate database server from the web server
> db.host=localhost
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