Hi Fabrice, If you look at dbSNPs record of this SNP, it is annotated as UTR-3: http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs1042701. dbSNP is continually updating their records and so probably updated the record with this information after November 2010 when we downloaded the data to build our track. When SNP 133 is released it will most likely include this update.
I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 6/21/11 6:47 AM, Fabrice Tourre wrote: > Dear list, > I download all annotation for snp from > http://genome.ucsc.edu/cgi-bin/hgTables?db=hg19&position=chr8:11421075-11423018&hgsid=198957197 > > Using these options: > > Genome:human > assembly:hg19 > track:All snps 132 > table:snp132 > > > In the file, for snp rs1042701 (chr8:11422045), it is annotated as > unknow. But when browser on the ucsc web, > http://genome.ucsc.edu/cgi-bin/hgTracks. I found it is in 3' UTR. > > Why there is this differece? > > Is it something wrong or I misunderstand something? > > Thanks. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
