Hi Sylvia, You can download the annotation data from our downloads page here: http://hgdownload.cse.ucsc.edu/downloads.html#human. Click on 'Annotation database', and download 'knownGene.txt.gz.'
You can use the Table Browser to find the number of protein-coding genes. From the main page, click on 'Tables' in the top blue navigation bar. Set the following: clade: Mammal genome: Human assembly: Feb. 2009 (GRCh37/hg19) group: Genes and Gene Predication Tracks track: UCSC Genes region: genome Click on 'filter' and enter the following Free-form query: cdsStart != cdsEnd. Click 'Submit' then click on the 'summary/statistics' button. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Sylvia Nuernberg wrote: > Hello, > > > > I am looking for the following information: > > > > current build/release data of the UCSC Genes annotation for hg19 > > > > number of UCSC protein coding genes (again hg19). > > > > Thanks a lot for any help J > > > > Sylvia > > > > Sylvia Nürnberg > > PhD student > > Department of Haematology, University of Cambridge & > > National Health Service Blood and Transplant Cambridge > > Long Road, Cambridge, CB2 0PT, > > UK > > > > > > > > Phone +44 (0)1223-58 8095 > > Fax +44 (0)1223-58 8136 > > E-mail to <mailto:[email protected]> [email protected] > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
