Hi Deli, Please see these previously-answered questions on this topic:
https://lists.soe.ucsc.edu/pipermail/genome/2011-February/025116.html https://lists.soe.ucsc.edu/pipermail/genome/2006-November/012218.html If you have further questions, please write back to [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 06/29/11 13:00, Deli Liu wrote: > What does exonFrames (-1, 1, 0, 1 and 2 in last column) mean in the > xenoRefGene of dog canFam2? > > NM_020923 chr37 + 17871328 17896391 17880435 17893285 40 > 17871328,17880435,17886560,17887180,17887966,17888306,17888578,17888815,17889124,17889261,17889288,1 > 7889647,17889913,17890291,17891753,17892167,17892439,17892654,17893060,17893874,17894018,17894082,17894182,17894353,17894462,17894608,17894762,17894806,17894 > 847,17894887,17894948,17895118,17895149,17895258,17895360,17895416,17895514,17895853,17895939,17896032, > 17871373,17880582,17887158,17887943,17888209,17888567 > ,17888806,17889111,17889131,17889277,17889396,17889677,17890274,17891509,17892139,17892286,17892571,17892687,17893285,17893966,17894044,17894099,17894191,178 > 94403,17894576,17894662,17894780,17894825,17894873,17894902,17895041,17895136,17895238,17895321,17895396,17895467,17895554,17895898,17896023,17896391, > 0 ZDBF > 2 incmpl incmpl > -1,1,1,0,0,1,0,0,0,2,2,1,0,0,1,1,0,2,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1, > > Thanks a lot > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
