Hi Lo, The best tool for this would be the Table Browser. To get to the table browser click on on "Tables" from the blue navigation bar.
Set the clade, genome, and assembly. Then you will need to set the following: group: Gene and Gene prediction tracks track: UCSC Genes table: knownGene region: genome identifiers (names/accessions): click on "paste list" and paste in the gene symbol following the instructions. output format: selected fields from primary and related tables click "get output" select the fields you want displayed. click "get output" Hope this helps lead you in the right direction. If you have further questions, please contact us at genome at soe.ucsc.edu Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Lo <[email protected]> Date: Thu, Jul 7, 2011 at 6:30 AM Subject: [Genome] Get gene symbol from the UCSC gene track-knowGene To: [email protected] Hello, I would like to obtain the coordinates of somes "genes" that appear in the "UCSC gene based on RefSeq, Uniprot, GenBank,CDD and Comparative genomics" track. The table associated is the knownGene, where I can get the name coded by "uc"_something_ else. But I am looking for the gene symbol, for instance: DQ584667. How could I get what "uc"_labels are a set of genes if I know the gene symbol? thanks in advance Lo _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
