Hi Momo, Yes, you can use the table browser the way you described. Since you are downloading the entire UCSC Genes set, you can also download the knownGene table straight from our download server here: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/knownGene.txt.gz. You can see the column headings for this file in the table browser by selecting the UCSC Genes track and then clicking "get schema".
I hope this information is helpful. Please contact us again at [email protected] if you have any further questions. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/5/11 7:45 PM, ÇÏ¿ÀÀá ·Î wrote: > UCSC Genome Browser Group > > Dear Sir/Madam, > > First of all I would like to retrieve the total lists of genes in human > genome hg18 then later I would like to look for genomic start and end > positions. For this I have entered the following options at UCSC table browser > - the clade/genome/assembly for hg18 > - group: Genes and gene prediction tracks > - the geneset you want to use/track ( UCSC Genes) > - table : knownGene > - region : Genome > - output format : BED > - click get output > > Is this the right way to go. I would be glad for your support. > > Regards, > Momo > Ph.D. student > Seoul National University College of Medicine > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
