Morgan, That might shed some but not very trustworthy light. You would need expression data. Keep in mind the concept of CIS and TRAN effects.
Please explain what you mean by "...finding their promoters to see if any have the same ones." You can abstract various sequences from the genome browser by searching on the gene under the Genome tab and then using the DNA tab to obtain the sequence. Depending on what you meant by promoter and same, you could use BLASTn (http://blast.ncbi.nlm.nih.gov/Blast.cgi) to align a query and subject promoter sequences to attempt to determine homology, for instance. If this is something you might do routinely, then I would download the datasets and the local BLAST toolkit. HTH, Kevin Kevin Viel, PhD Senior Research Statistician Patient Safety & Quality International College of Robotic Surgery Saint Joseph's Translational Research Institute Saint Joseph's Hospital 5671 Peachtree Dunwoody Road, NE, Suite 330 Atlanta, GA 30342 (678) 843-6076: Direct Phone (678) 843-6153: Facsimile (404) 558-1364: Mobile [email protected] > -----Original Message----- > From: [email protected] [mailto:[email protected]] On > Behalf Of Morgan Preziosi > Sent: Monday, July 11, 2011 3:32 PM > To: [email protected] > Subject: [Genome] UCSC > > Hello, > > I am trying to find out if any genes are co regulated within a > group of 24. I was planning on doing that by finding their promoters > to see if any have the same ones. Can I do this on UCSC Genome > Bioinformatics? If so, how? > > Thanks, > Morgan Preziosi > > -- > Morgan Preziosi > University of Rochester 2013 > CPU Box 271771 > (716) 474 1688 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome Confidentiality Notice: This e-mail, including any attachments is the property of Catholic Health East and is intended for the sole use of the intended recipient(s). It may contain information that is privileged and confidential. Any unauthorized review, use, disclosure, or distribution is prohibited. If you are not the intended recipient, please delete this message, and reply to the sender regarding the error in a separate email. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
