Hi Maxime, > but : < chr8 55539859 55539861 -/GG 2 0,0 0,0 > Is'nt note > like frameshift ! (del 2 nucleotide cause also a frameshift)
That is a bug -- thank you for reporting it! It is fixed in our source code; the fix will be propagated to genome.ucsc.edu in a couple weeks. > in addition, for missens mutation, Browser note the novel Amino Acid, Can > the borwser note Aminoacid and stop position for frameshift ? We'll consider that as a feature request (no promises). Thanks, Angie ----- "Maxime Hebrard" <[email protected]> wrote: > From: "Maxime Hebrard" <[email protected]> > To: [email protected] > Sent: Wednesday, July 13, 2011 12:55:59 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] SNP Variation > > Hello, > > I visualize with UCSC Genome Browser my own SNP Variation. > I use Personal Genome SNP format > > I have question for deletion. > for exemple : < chr8 55539859 55539860 -/G 2 0,0 0,0 > is > note like frameshift (del 1 nucleotide, it s ok) > but : < chr8 55539859 55539861 -/GG 2 0,0 0,0 > Is'nt note > like frameshift ! (del 2 nucleotide cause also a frameshift) > Wrere is the problem ? > > in addition, for missens mutation, Browser note the novel Amino Acid, Can > the borwser note Aminoacid and stop position for frameshift ? > > Thanks > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
