Hi Kaylan, To view segmental duplications in the UCSC Genome browser of the latest assemblies for human (hg19) and mouse you will need to select the "Segmental Dups" track while in the mm9 and hg19 browsers. This track is located under the "Variations and Repeats" group.
Here are links to track controls/track description pages: hg19 http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr6&g=refGene mm9 http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&c=chr10&g=refGene If you have further questions, please don't hesitate to contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Kalyan Ganguly <[email protected]> Date: Wed, Jul 13, 2011 at 8:40 PM Subject: [Genome] tool for identification of segmented duplication region To: [email protected] Dear colleague, In view of identification of a syntenic region spanning over 3.2 MB region on human chromosome 6 and on mouse chromosome 10, I am looking for association of any segmental duplications (SDs) with the region. I would appreciate your help in directing me to the tool for identification of SDs in UCSC Genome Browser. Thank you in anticipation of your reply. Regards, Kalyan Ganguly _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
