Hello,
I am would like to use the logic outlined in the genome browser source code
for twoBit.h in another tool I am working on. Is it at all possible to use
the components of the genome browser in a simple/meaningful way?
In detail I would like to do something like this (extract the characters
between position 2000 and 3000 of chromosome 1 in a 2bit file):
#include <iostream>
#include <twoBit.h>
using namespace std;
using namespace genome_browser; //I am not sure if this at all exists or
would even make sense in this case
int main (int argc, char *argv[])
{
string bit_file = argv[1];
cout << twoBitReadSeqFrag(bit_file, 1, 2000, 3000); << endl;
}
Thank you so much for your help.
Jens
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