Hi Carsten, Thank you for the clarification. So all our users can benefit from the clarification of your question and and so my colleagues can help provide ideas on the answer, please resend your email to our mailing list: [email protected].
Thank you, Katrina Learned UCSC Genome Bioinformatics Group On 8/5/11 8:59 AM, Carsten Raabe wrote: Dear Katrina, thanks a lot for your fast reply; however this only helps to download *all* exons that are part of the all_mRNA database. I am interested to download the *CDS exons* that are contained within this database separately. Therefore is there any table that would define which exon belongs to the UTR and which belongs to the CDS. Thankx in advance , C. Dear Madame, dear Sir, my name is Carsten and I am working at the institute of experimental Pathology at Muenster University in Germany. I wonder whether it would be possible to download all CDS exons contained within the human all mRNA database separately . I tried to manage the download via the table browser using the BED format, however there is no option like "CDS exon" or "5'UTR exon" provided as it is in the UCSC gene annotation. In fact I would happy to know the corresponding exon positions in the mRNA, or even the positions of translational start and stopcodon would do equally well. Thanks a lot in advance, C. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
