Hi, I want to make sure I understand the finer details of the CRG Alignability tracks before I use that data - it should be very useful to me.
For a given k-mer window, is the calculated value assigned the the first nucleotide of the window, mid-point? (if the start of the window, I assume it just uses the plus strand. if the midpoint, I think plus and minus would give the same result(?)). It's not quite clear to me from the track documentation http://genome.ucsc.edu/cgi-bin/hgTables?db=hg18&hgta_group=map&hgta_track=wgEncodeMapability&hgta_table=wgEncodeCrgMapabilityAlign40mer&hgta_doSchema=describe+table+schema (that doc does provie equivalent information for some of the other mapability tracks) thanks very much, Janet Young ------------------------------------------------------------------- Dr. Janet Young Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., C3-168, P.O. Box 19024, Seattle, WA 98109-1024, USA. tel: (206) 667 1471 fax: (206) 667 6524 email: jayoung ...at... fhcrc.org ------------------------------------------------------------------- _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
