Hello experts,
Hope you can please help. Is there a script that can help me do the
following iteratively. I am seeking to generate a list of genes within N bp
(N=500bp to 500 kbp in small intervals), upstream or downstream with respect
to some SNP_probe or rs_marker. Then I need to repeat the same for a given
set of such genomic markers.
For example I have 10 markers, 3 of which are listed
{ rs10188010, rs17032836, rs13396777, ....}. I need to extract a systematic
list of genes within N bp, upstream and downstream of these genomic markers.
Hope you can please help suggest some command line application / gui
application that can handle such a query. Thanks in advance.
Best,
sarosh
______________________________
Sarosh N. Fatakia, PhD
530 45th Street
8162 Rangos Research Center
University of Pittsburgh
Pittsburgh, PA 15201
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