For Cow, try using the productName table, field: name. The refLink table (product) might also be helpful.
To access these tables, choose "group" all tables". -Greg On 8/15/11 3:32 PM, Kim Spradling wrote: > Thanks so much for your response! > > I see how to obtain gene descriptions using the kgXref table for the > human genome, but I don't see this option for the cow genome. Is > there another way to obtain gene descriptions for cow genes? > > Thanks again for your help, > Kim > /*___________________________________________________*/ > /Kimberly D. Spradling, Ph.D./ > /Postdoctoral Scientist, Department of Genetics/ > /Texas Biomedical Research Institute/ > /7620 NW Loop 410/ > /San Antonio, TX 78245/ > /Phone: 210-258-9624/ > /E-mail: [email protected] > <mailto:[email protected]>/ > /Website: www.TxBiomed.org <http://www.TxBiomed.org>/ > > On Aug 15, 2011, at 4:58 PM, Greg Roe wrote: > >> Hi Kim, >> >> I think what you're referring to as the "gene name" we call the "gene >> description", which is maybe why you couldn't find it. You can get >> the description from the kgXref table. In the table browser, for >> output format, select "selected fields from primary and related tables". >> >> When you click get output you'll be take to a screen where you can >> add tables to your query under the Linked Tables list. Check off >> kgXref and click allow selection from checked tables (very bottom). >> Now you can select the description field from kgXref and submit your >> query. >> >> Please let us know if you have any additional questions: >> [email protected] <mailto:[email protected]> >> >> - >> Greg Roe >> UCSC Genome Bioinformatics Group >> >> >> On 8/15/11 6:35 AM, Kim Spradling wrote: >>> Good Morning, >>> >>> I would like to add the full gene names to a list of mRNA accession >>> numbers and official gene symbols. I have found a way to obtain the >>> protein product names using the official gene symbols in the table >>> browser using the reflink table, but is it possible to obtain the >>> gene names? >>> >>> Thanks, >>> Kim >>> ___________________________________________________ >>> Kimberly D. Spradling, Ph.D. >>> Postdoctoral Scientist, Department of Genetics >>> Texas Biomedical Research Institute >>> 7620 NW Loop 410 >>> San Antonio, TX 78245 >>> Phone: 210-258-9624 >>> E-mail: [email protected] >>> <mailto:[email protected]> >>> Website: www.TxBiomed.org <http://www.TxBiomed.org> >>> >>> _______________________________________________ >>> Genome maillist - [email protected] <mailto:[email protected]> >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
