Hi Abi, The main issue here I believe is that this data is in the form of a wiggle file/track, and you're downloading it into a bed file, thus stripping some of the information out. I would recommend downloading the original data from our downloads page:
http://hgdownload.cse.ucsc.edu/downloads.html The file(s) you want are here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/placentalMammals/ You may also want to take a look at the information given about the data one directory up from there. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 8/15/11 1:07 PM, Lakshmanan, Abirami wrote: > Hi, > > I downloaded the tb_phastConsElements46wayPlacental table (hg19) in bed > format. The downloaded file does not match with the one displayed in the > genome browser view. I find many CNE elements missing in the file I > downloaded. Is there a way where I can get the entire data for Placental > Mammal Conserved Elements. > > Thanks, > Abi > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
