Please follow the instructions under kent/src/product. Note that important information relative to compiling knet is found in kent/src/product/scripts/browserEnvironment.txt
-Galt On 08/29/11 08:06, Daofeng Li wrote: > Hi Dear list, > > i enounter following error when i try to compile the kent source: > > knetUdc.c:13:8: error: redefinition of ‘struct knetFile_s’ > /home/dli/samtools-0.1.11/knetfile.h:24:16: note: originally defined here > knetUdc.c: In function ‘kuOpen’: > knetUdc.c:29:3: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:30:57: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c: In function ‘kuRead’: > knetUdc.c:44:59: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:45:25: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c: In function ‘kuSeek’: > knetUdc.c:57:29: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:60:54: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:61:11: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c: In function ‘kuTell’: > knetUdc.c:68:48: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:69:18: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c: In function ‘kuClose’: > knetUdc.c:75:49: error: ‘knetFile’ has no member named ‘udcf’ > knetUdc.c:76:18: error: ‘knetFile’ has no member named ‘udcf’ > cc1: warnings being treated as errors > knetUdc.c: In function ‘knetUdcInstall’: > knetUdc.c:84:1: error: implicit declaration of function ‘knet_init_alt’ > knetUdc.c: In function ‘kuTell’: > knetUdc.c:70:1: error: control reaches end of non-void function > knetUdc.c: In function ‘kuRead’: > knetUdc.c:46:1: error: control reaches end of non-void function > make: *** [knetUdc.o] Error 1 > > i also tried different version of samtools and tabix, but still encounter > this error. How to solve this? Thx in advance:) > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
