Recently, I have used Blat for  blasting  against my custom query and reference 
sequence files. I got results. I need to change the threshold 
parameters(Evalue) to get better hits. I went through the Blat help 
information, but I could not find anything. I appreciate if you can let me know 
how to set up the option parameters.

Thank you,

Shakuntala Fathepure
Dept. of Botany
Oklahoma State University
Stillwater, OK 74078
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