Hi Varun, To get output exactly as you want, I would suggest galaxy: http://main.g2.bx.psu.edu/
You can upload your list as one table, and import a table from the UCSC table browser and join the two there. They also have some sorting and filtering features that might be useful. If you need help, their support can be found here: http://wiki.g2.bx.psu.edu/Support Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 8/29/11 11:16 AM, varun gupta wrote: > Hi Everyone > I have a doubt. > Suppose i have a list of some genes(in my case it is ribosomal protein > genes). When i use the genome browser and put the name of the gene (suppose > rpl3) in the gene column and hit enter, I get the coordinates of that gene > and the gene size. > > *What i want:* I want to access all the genes at once, i mean i just paste > the list somewhere within the browser and i get the coordinates and gene > size for those genes. But my requisite condition is that i should get the > coordinates of those genes in the same order as i made the list of genes and > pasted it. I don't want the unordered output which is the case most of the > times and hence it messes up the result. > > i will explain a liitle more so that u can understand > Suppose i have 3 genes pasted in this order > > rpl3 > rpl4 > rpl5 > > Now i want the output also in the same order something like this: > > rpl3 chr15:79,908,211-79,913,836 5626 > rpl4 chr9:64,021,194-64,026,369 5176 > rpl5 chr5:108,329,547-108,338,024 8478 > > > I don't want out put like this > > rpl4 chr9:64,021,194-64,026,369 5176 > rpl5 chr5:108,329,547-108,338,024 8478 > rpl3 chr15:79,908,211-79,913,836 5626 > > > > > Please it would be really kind of you if you can help me out in this because > this will save a lot of my time > > > Regards > Varun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
